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  • Chatterjee S, Vanrobaeys Y,  Gleason AI, Park BJ, Heiney SA, Rhone AE, Nourski KV, Langmack L,  Basu B, Mukherjee U, Kovach CK, Kocsis Z, Kikuchi Y, Ayala YA, Petkov CI, Hefti MM,  Bahl E, Michaelson JJ, Kawasaki H, Oya H, Howard III MA, Nickl-Jockschat T, Lin L-C, Abel T. BiorXiv Link 

Activity-dependent gene expression in the human brain.

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  • Criscuolo A, Schwartze M, Prado L, Ayala YA, Merchant H, Kotz S. Progress in Neurobiology 2023. Link

Macaque monkeys and humans sample temporal regularities in the acoustic environment. 

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  • Elgueda D, Ayala YA, Delano PH. Front. Neurosci 2022. 

Editorial: Listening in action: Attention, emotions, and cognition in the auditory system. Link

 

  • Gamez J, Yc K, Ayala YA, Dotov D, Prado L, Merchant H. Ann NY Acad Sci 2018. Link

Predictive rhythmic tapping to isochronous and tempo changing metronomes in the nonhuman primate. 

 

  • Ayala YA*, Lehmann A, Merchant H*. Scientific Reports 2017. *Corresponding Author. Link

Monkeys share the neurophysiological basis for encoding sound periodicities captured by the frequency-following response with humans. 

 

  • Ayala YA, Malmierca MS. Brain Structure & Function 2017. Link

The effect of inhibition on stimulus-specific adaptation in the inferior colliculus

 

  • Valdes-Baizabal C, Parras GG, Ayala YA, Malmierca MS. Scientific Reports 2017. Link

Endocannabinoid Modulation of Stimulus-Specific Adaptation in Inferior Colliculus Neurons of the Rat. 

 

  • Ayala YA, Pérez-González D, Duque D, Palmer AR, Malmierca MS. JOVE 2016. Link

Extracellular Recording of Neuronal Activity Combined with Microiontophoretic Application of Neuroactive Substances in Awake Mice. 

 

  • Ayala YA, Pérez-González D, Malmierca MS. Biological Psychology 2015. Link

Stimulus-specific adaptation in the inferior colliculus. The role of excitatory, inhibitory and modulatory inputs. 

 

  • Ayala YA, Malmierca MS. Journal of Neuroscience 2015. Link

Cholinergic modulation of stimulus-specific adaptation in the inferior colliculus. 

 

  • Ayala YA, Udeh A, Dutta K, Bishop D, Malmierca M, Oliver D. Scientific Reports 2015. Link

Differences in the strength of cortical and brainstem inputs to SSA and non-SSA neurons in the inferior colliculus. 

 

  • Ayala YA*, Duque D*, Malmierca MS. Cell and Tissue Research 2015. *equal contribution Link

Deviance detection in auditory subcortical structures: what can we learn from their neurochemistry and neuronal connectivity? 

 

  • Ayala YA, Malmierca MS. Frontiers in Neural Circuits 2012. Link

Stimulus-specific adaptation and deviance detection in the inferior colliculus. 

 

  • Ayala YA, Pérez-González D, Duque D, Nelken I, Malmierca MS. Frontiers in Neural Circuits 2012. Link

Frequency discrimination and stimulus deviance in the inferior colliculus and cochlear nucleus. 

 

  • Duque D, Pérez-González D, Ayala YA, Palmer AR, Malmierca MS. J Neuroscience 2012. Link

Topographic distribution, frequency and intensity dependence of stimulus-specific adaptation in the inferior colliculus of the rat. 

 

  • Aleksandrov V, Alexandrova T, Vega R, Castillo G, Reyes M, Aguilar Y, Ortega A, Shulenina N, Soto E. Research in Computing Science 2008. Link

Response of the gravito-inertial mechanoreceptors during a fall: a mathematical model. 

Abstract: Direct electrical stimulation has been used for decades as a gold standard clinical tool to map cognitive function in neurosurgery patients18. However, the molecular impact of electrical stimulation in the human brain is unknown. Here, using state-of-the-art transcriptomic and epigenomic sequencing techniques, we define the molecular changes in bulk tissue and at the single-cell level in the human cerebral cortex following direct electrical stimulation of the anterior temporal lobe in patients undergoing neurosurgery. Direct electrical stimulation surprisingly had a robust and consistent impact on the expression of genes related to microglia-specific cytokine activity, an effect that was replicated in mice. Using a newly developed deep learning computational tool, we further demonstrate cell type-specific molecular activation, which underscores the effects of electrical stimulation on gene expression in microglia. Taken together, this work challenges the notion that the immediate impact of electrical stimulation commonly used in the clinic has a primary effect on neuronal gene expression and reveals that microglia robustly respond to electrical stimulation, thus enabling these non-neuronal cells to sculpt and shape the activity of neuronal circuits in the human brain.

Macaque monkeys and humans sample temporal regularities in the
acoustic environment

Abstract: Many animal species show comparable abilities to detect basic rhythms and produce rhythmic behavior. Yet, the capacities to process complex rhythms and synchronize rhythmic behavior appear to be species-specific: vocal learning animals can, but some primates might not. This discrepancy is of high interest as there is a putative link between rhythm processing and the development of sophisticated sensorimotor behavior in humans. Do our closest ancestors show comparable endogenous dispositions to sample the acoustic environment in the absence of task instructions and training? We recorded EEG from macaque monkeys and humans while they passively listened to isochronous equitone sequences. Individual- and trial-level analyses showed that macaque monkeys’ and humans’ delta-band neural oscillations encoded and tracked the timing of auditory events. Further, mu- (8–15 Hz) and beta-band (12–20 Hz) oscillations revealed the superimposition of varied accentuation patterns on a subset of trials. These observations suggest convergence in the encoding and dynamic attending of temporal regularities in the acoustic environment, bridging a gap in the phylogenesis of rhythm cognition.

Predictive rhythmic tapping to isochronous and tempo
changing metronomes in the nonhuman primate

Abstract: Beat entrainment is the ability to entrain one’s movements to a perceived periodic stimulus, such as a metronome or a pulse in music. Humans have a capacity to predictively respond to a periodic pulse and to dynamically adjust their movement timing to match the varying music tempos. Previous studies have shown that monkeys share some of the human capabilities for rhythmic entrainment, such as tapping regularly at the period of isochronous stimuli. However, it is still unknown whether monkeys can predictively entrain to dynamic tempo changes like humans. To address this question, we trained monkeys in three tapping tasks and compared their rhythmic entrainment abilities with those of humans. We found that, when immediate feedback about the timing of each movement is provided, monkeys can predictively entrain to an isochronous beat, generating tapping movements in anticipation of the metronome pulse. This ability also generalized to a novel untrained tempo. Notably, macaques can modify their tapping tempo by predicting the beat changes of accelerating and decelerating visual metronomes in a manner similar to humans. Our findings support the notion that nonhuman primates share with humans the ability of temporal anticipation during tapping to isochronous and smoothly changing sequences of stimuli.

Monkeys share the neurophysiological basis for encoding sound periodicities captured by the frequency-following response with humans.

Abstract: The extraction and encoding of acoustical temporal regularities are fundamental for human cognitive auditory abilities such as speech or beat entrainment. Because the comparison of the neural sensitivity to temporal regularities between human and animals is fundamental to relate non-invasive measures of auditory processing to their neuronal basis, here we compared the neural representation of auditory periodicities between human and non-human primates by measuring scalp-recorded frequency- following response (FFR). We found that rhesus monkeys can resolve the spectrotemporal structure of periodic stimuli to a similar extent as humans by exhibiting a homologous FFR potential to the speech syllable /da/. The FFR in both species is robust and phase-locked to the fundamental frequency of the sound, reflecting an effective neural processing of the fast-periodic information of subsyllabic cues. Our results thus reveal a conserved neural ability to track acoustical regularities within the primate order. These findings open the possibility to study the neurophysiology of complex sound temporal processing in the macaque subcortical and cortical areas, as well as the associated experience-dependent plasticity across the auditory pathway in behaving monkeys.

The effect of inhibition on stimulus-specific adaptation in the inferior colliculus

Abstract: The inferior colliculus is a center of convergence for inhibitory and excitatory synaptic inputs that may be activated simultaneously by sound stimulation. Stimulus repetition may generate response habituation by changing the efficacy of neuron’s synaptic inputs. Specialized IC neurons reduce their response to repetitive tones, but restore their firing when a different and infrequent tone occurs, a phenomenon known as stimulus specific adaptation. Here, using the microiontophoresis technique, we determined the role of GABAA-, GABAB-, and glycinergic receptors in stimulus-specific adaptation (SSA). We found that blockade of postsynaptic GABAB receptors selectively modulated response adaptation to repetitive sounds, whereas blockade of presynaptic GABAB receptors exerted a gain control effect on neuron excitability. Adaptation decreased when postsynaptic GABAB receptors were blocked, but increased if the blockade affected the presynaptic GABAB receptors. A dual, paradoxical effect was elicited by blockade of glycinergic receptors, i.e., both increase and decrease in adaptation. Moreover, simultaneous co-application of GABAA, GABAB, and glycinergic antagonists demonstrated that local GABA- and glycinemediated inhibition contributes to only about 50% of SSA.

Endocannabinoid Modulation of Stimulus-Specific Adaptation in Inferior Colliculus Neurons of the Rat

Abstract: Cannabinoid receptors (CBRs) are widely distributed in the brain, including the inferior colliculus (IC). Here, we aim to study whether endocannabinoids influence a specific type of neuronal adaptation, namely, stimulus-specific adaptation (SSA) found in some IC neurons. SSA is important because it has been found as early as the level of the midbrain and therefore it may be a neuronal correlate of early indices of deviance detection. Furthermore, recent studies have demonstrated a direct link between SSA and MMN, that is widely used as an outcome measure in a variety of human neurodegenerative disorders. SSA is considered a form of short-term plasticity, and CBRs have been shown to play a role in short-term neural plasticity. Therefore, it is reasonable to hypothesize that endocannabinoids may play a role in the generation or modulation of SSA. We recorded single units in the IC under an oddball paradigm stimulation. The results demonstrate that cannabinoid agonists lead to a reduction in the neuronal adaptation. This change is due to a differential increase of the neuronal firing rate to the standard tone alone. Furthermore, we show that the effect is mediated by the cannabinoid receptor 1 (CBR1). Thus, cannabinoid agonists down-modulate SSA in IC neurons.

Extracellular Recording of Neuronal Activity Combined with Microiontophoretic Application of Neuroactive Substances in Awake Mice

Abstract: Differences in the activity of neurotransmitters and neuromodulators, and consequently different neural responses, can be found between anesthetized and awake animals. Therefore, methods allowing the manipulation of synaptic systems in awake animals are required in order to determine the contribution of synaptic inputs to neuronal processing unaffected by anesthetics. Here, we present methodology for the construction of electrodes to simultaneously record extracellular neural activity and release multiple neuroactive substances at the vicinity of the recording sites in awake mice. By combining these procedures, we performed microiontophoretic injections of gabazine to selectively block GABAA receptors in neurons of the inferior colliculus of head-restrained mice. Gabazine successfully modified neural response properties such as the frequency response area and stimulus-specific adaptation. Thus, we demonstrate that our methods are suitable for recording single-unit activity and for dissecting the role of specific neurotransmitter receptors in auditory processing. The main limitation of the described procedure is the relatively short recording time (~3 hr), which is determined by the level of habituation of the animal to the recording sessions. On the other hand, multiple recording sessions can be performed in the same animal. The advantage of this technique over other experimental procedures used to manipulate the level of neurotransmission or neuromodulation (such as systemic injections or the use of optogenetic models), is that the drug effect is confined to the local synaptic inputs to the target neuron. In addition, the custom-manufacture of electrodes allows adjustment of specific parameters according to the neural structure and type of neuron of interest (such as the tip resistance for improving the signal-to-noise ratio of the recordings).

Stimulus-specific adaptation in the inferior colliculus. The role of excitatory, inhibitory and modulatory inputs

Abstract: Patients suffering from pathologies such as schizophrenia, depression or dementia exhibit cognitive impairments, some of which can be reflected in event-related potential (ERP) measurements as the mismatch negativity (MMN). The MMN is one of the most commonly used ERPs and provides an electrophysiological index of auditory change or deviance detection. Moreover, MMN has been positioned as a potentially promising biomarker candidate for the diagnosis and prediction of the outcome of schizophrenia. Dysfunction of neural receptors has been linked to the etiopathology of schizophrenia or the induction of psychophysiological anomalies similar to those observed in schizophrenia. Stimulusspecific adaptation (SSA) is a neural mechanism that contributes to the upstream processing of auditory change detection. Auditory neurons that exhibit SSA specifically adapt their response to repetitive sounds but maintain their excitability to respond to rare ones. Thus, by studying the role of neuronal receptors on SSA, we can contribute to detangle the cellular bases of the impairments in deviance processing occurring in mental pathologies. Here, we review the current knowledge on the effect of GABAA-mediated inhibition and the modulation of acetylcholine on SSA in the inferior colliculus, and we add unpublished original data obtained blocking glutamate receptors. We found that the blockade of GABAA and glutamate receptors mediates an overall increase or decrease of the neural response, respectively, while acetylcholine affects only the response to the repetitive sounds. These results demonstrate that GABAergic, glutamatergic and cholinergic receptors play different and complementary roles on shaping SSA.

Cholinergic modulation of stimulus-specific adaptation in the inferior colliculus.

Abstract: Neural encoding of an ever-changing acoustic environment is a complex and demanding process that depends on modulation by neuro-active substances. Some neurons of the inferior colliculus (IC) exhibit “stimulus-specific adaptation” (SSA), i.e., a decrease in their response to a repetitive sound, but not to a rare one. Previous studies have demonstrated that acetylcholine (ACh) alters the frequency response areas of auditory neurons and therefore is important in the encoding of spectral information. Here, we address how microion-tophoretic application of ACh modulates SSA in the IC of the anesthetized rat. We found that ACh decreased SSA in IC neurons by increasing the response to the repetitive tone. This effect was mainly mediated by muscarinic receptors. The strength of the cholinergic modulation depended on the baseline SSA level, exerting its greatest effect on neurons with intermediate SSA responses across IC subdivisions. Our data demonstrate that the increased availability of ACh exerts transient functional changes in partially adapting IC neurons, enhancing the sensory encoding of the ongoing stimulation. This effect potentially contributes to the propagation of ascending sensory-evoked afferent activity through the thalamus en route to the cortex.

Differences in the strength of cortical and brainstem inputs to SSA and non-SSA neurons in the inferior colliculus

Abstract: In an ever changing auditory scene, change detection is an ongoing task performed by the auditory brain. Neurons in the midbrain and auditory cortex that exhibit stimulus-specific adaptation (SSA) may contribute to this process. Those neurons adapt to frequent sounds while retaining their excitability to rare sounds. Here, we test whether neurons exhibiting SSA and those without are part of the same networks in the inferior colliculus (IC). We recorded the responses to frequent and rare sounds and then marked the sites of these neurons with a retrograde tracer to correlate the source of projections with the physiological response. SSA neurons were confined to the non-lemniscal subdivisions and exhibited broad receptive fields, while the non-SSA were confined to the central nucleus and displayed narrow receptive fields. SSA neurons receive strong inputs from auditory cortical areas and very poor or even absent projections from the brainstem nuclei. On the contrary, the major sources of inputs to the neurons that lacked SSA were from the brainstem nuclei. These findings demonstrate that auditory cortical inputs are biased in favor of IC synaptic domains that are populated by SSA neurons enabling them to compare top-down signals with incoming sensory information from lower areas.

Deviance detection in auditory subcortical structures: what can we learn from their neurochemistry and neuronal connectivity?

Abstract: A remarkable ability of animals that is critical for survival is to detect and respond to to unexpected stimuli in an ever-changing world. Auditory neurons that show stimulus specific adaptation (SSA), i.e., a decrease in their response to frequently occurring stimuli while maintaining responsiveness when different stimuli are presented, might participate in the coding of deviance occurrence. Traditionally, deviance detection is measured by the mismatch negativity (MMN) potential in studies of evoked local field potentials. We present a review of the state-of-the-art of SSA in auditory subcortical nuclei, i.e., the inferior colliculus and medial geniculate body of the thalamus, and link the differential receptor distribution and neural connectivity of those regions in which extreme SSA has been found. Furthermore, we review both SSA and MMN-like responses in auditory and non-auditory areas that exhibit multimodal sensitivities that we suggest conform to a distributed network encoding for deviance detection. The understanding of the neurochemistry and response similarities across these different regions will contribute to a better understanding of the neural mechanism underlying deviance detection.
 

Stimulus-specific adaptation and deviance detection in the inferior colliculus

Abstract: Deviancy detection in the continuous flow of sensory information into the central nervous system is of vital importance for animals. The task requires neuronal mechanisms that allow for an efficient representation of the environment by removing statistically redundant signals. Recently, the neuronal principles of auditory deviance detection have been approached by studying the phenomenon of stimulus-specific adaptation (SSA). SSA is a reduction in the responsiveness of a neuron to a common or repetitive sound while the neuron remains highly sensitive to rare sounds (Ulanovsky et al., 2003). This phenomenon could enhance the saliency of unexpected, deviant stimuli against a background of repetitive signals. SSA shares many similarities with the evoked potential known as the “mismatch negativity,” (MMN) and it has been linked to cognitive process such as auditory memory and scene analysis (Winkler et al., 2009) as well as to behavioral habituation
(Netser et al., 2011). Neurons exhibiting SSA can be found at several levels of the auditory pathway, from the inferior colliculus (IC) up to the auditory cortex (AC). In this review, we offer an account of the state-of-the art of SSA studies in the IC with the aim of contributing to the growing interest in the single-neuron electrophysiology of auditory deviance detection. The dependence of neuronal SSA on various stimulus features, e.g., probability of the deviant stimulus and repetition rate, and the roles of the AC and inhibition in shaping SSA at the level of the IC are addressed.

Frequency discrimination and stimulus deviance in the inferior colliculus and cochlear nucleus

Abstract: Auditory neurons that exhibit stimulus-specific adaptation (SSA) decrease their response to common tones while retaining responsiveness to rare ones. We recorded single-unit responses from the inferior colliculus (IC) where SSA is known to occur and we explored for the first time SSA in the cochlear nucleus (CN) of rats. We assessed an important functional outcome of SSA, the extent to which frequency discriminability depends on sensory context. For this purpose, pure tones were presented in an oddball sequence as standard (high probability of occurrence) or deviant (low probability of occurrence) stimuli. To study frequency discriminability under different probability contexts, we varied the probability of occurrence and the frequency separation between tones. The neuronal sensitivity was estimated in terms of spike-count probability using signal detection theory. We reproduced the finding that many neurons in the IC exhibited SSA, but we did not observe significant SSA in our CN sample. We concluded that strong SSA is not a ubiquitous phenomenon in the CN. As predicted, frequency discriminability was enhanced in IC when stimuli were presented in an oddball context, and this enhancement was correlated with the degree of SSA shown by the neurons. In contrast, frequency discrimination by CN neurons was independent of stimulus context. Our results demonstrated that SSA is not widespread along the entire auditory pathway, and suggest that SSA increases frequency discriminability of single neurons beyond that expected from their tuning curves.

Topographic distribution, frequency and intensity dependence of stimulus-specific adaptation in the inferior colliculus of the rat.

Abstract: The ability to detect unexpected sounds within the environment is an important function of the auditory system, as a rapid response may be required for the organism to survive. Previous studies found a decreased response to repetitive stimuli (standard), but an increased response to rare or less frequent sounds (deviant) in individual neurons in the inferior colliculus (IC) and at higher levels. This phenomenon, known as stimulus-specific adaptation (SSA) has been suggested to underpin change detection. Currently, it is not known how SSA varies within a single neuron receptive field, i.e., it is unclear whether SSA is an unique property of the neuron or a feature that is frequency and/or intensity dependent. In the present experiments, we used the common SSA index (CSI) to quantify and compare the degree of SSA under different stimulation conditions in the IC of the rat. We calculated the CSI at different intensities and frequencies for each individual IC neuron to map the neuronal CSI within the receptive field. Our data show that high SSA is biased toward the high-frequency and low-intensity regions of the receptive field. We also find that SSA is better represented in the earliest portions of the response, and there is a positive correlation between the width of the frequency response area of the neuron and the maximum level of SSA. The present data suggest that SSA in the IC is not mediated by the intrinsic membrane properties of the neurons and instead might be related to an excitatory and/or inhibitory input segregation.

Response of the gravito-inertial mechanoreceptors during a fall: a mathematical model.

Abstract: Various types of vestibular prosthesis prototypes have been developed as an aid for treatment of equilibrium disturbances. One of the primary tasks for improving these prosthetic devices is the development of output stimulating impulses that may resemble the natural response of the vestibular system. In this work, a mathematical model of the information output from the gravito-inertial mechanoreceptor of the vestibular apparatus is presented. For this, we have considered five compartments: mechano-electrical transduction, adaptation of transduction, hair-cell ionic current, synaptic transmission, and afferent neuron discharge. The numerical parameters of the model were obtained from experiments that were done in the inner ear of the rat. The results of the numerical analysis of the model showed that the mathematical modelling may be used to construct an encoder system for the artificial sensors (micro accelerometer) contributing to the development of a reliable vestibular prosthesis prototype.

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